The Employee vs Contractor Decision in Allied Health: What Every Provider and Clinician Should Know

Choosing between engaging employees or contractors is one of the most important workforce decisions in Allied Health. Whether you're a business owner building a sustainable team or a clinician weighing up your next career move, understanding the trade-offs is essential.

This guide explores the pros and cons of each model, explains key compliance risks like sham contracting, and offers practical advice to help you decide what works best based on your goals, structure, and stage of business.

👉 Prefer a visual summary? Check out my LinkedIn carousel here.

Understanding the Models

In Australia, an employee is typically paid through payroll, with tax, superannuation, and entitlements like sick leave and annual leave handled by the employer. They work within the business's systems, policies, and supervision structure. Employees are generally considered part of the organisation and are entitled to various benefits, protections, and training opportunities.

A contractor, on the other hand, is an independent service provider. They hold their own ABN, are responsible for their own tax and super, and typically invoice the business for services. Contractors have more autonomy, but also more responsibility, such as arranging their own professional development, covering insurances, and dealing with their own cancellations.

The Fair Work Ombudsman and the ATO both stress that it’s not enough to label someone a contractor. If the nature of the work, control, and relationship aligns with employment, you could be at risk of sham contracting (we’ll cover that shortly).

Disclaimer: This blog provides general information only and does not constitute legal or HR advice. Please consult a qualified professional to assess your specific obligations and risks.

Pros and Cons for Clinicians

Employee Model

Pros:

  • Paid leave (sick, annual, parental)

  • Superannuation paid by employer

  • Job security and predictable income

  • Structured supervision and support

  • Access to professional development and team culture

Cons:

  • Less flexibility with hours and caseload

  • Lower hourly rate compared to contracting

  • Typically restricted to working for one provider

Being employed is often a great choice for clinicians early in their careers or those who value stability and mentorship. It allows clinicians to embed in a supportive team, benefit from structured learning, and focus more on client care than administration.

Contractor Model

Pros:

  • Higher hourly rate

  • Full control over schedule and work location

  • Flexibility to work across multiple businesses

  • Greater autonomy in managing caseload and services

Cons:

  • No paid leave or public holidays

  • Must manage tax, super, insurance, and compliance

  • No built-in team support or supervision

  • Unpaid time for admin, training, or cancellations

For experienced clinicians, contracting can offer freedom and financial upside. It can also be appealing for parents, part-time workers, or those building a portfolio career across different settings.

Pros and Cons for Employers

Employee Model

Pros:

  • Stronger integration into systems, culture, and team

  • Easier to provide consistent supervision and support

  • More reliable availability and caseload stability

  • Greater influence over client experience and processes

Cons:

  • Higher ongoing costs (wages, super, leave liabilities)

  • Greater compliance and HR responsibilities

  • Less flexibility to scale up/down quickly

Employees contribute to a stronger culture and long-term team cohesion. They’re often more invested in the organisation’s mission and are easier to align to strategic goals.

Contractor Model

Pros:

  • Scalable and flexible workforce model

  • No leave, super, or PAYG liabilities

  • Great for short-term, regional, or overflow coverage

  • Faster onboarding and exit process

Cons:

  • Risk of sham contracting and misclassification

  • Less consistency and loyalty

  • May not fully adopt your systems or values

  • Typically higher hourly rates

Contractors allow providers to respond quickly to demand spikes, trial new services, and reduce fixed costs. However, over-reliance can lead to cultural fragmentation or quality inconsistency.

📅 Looking to review your current workforce model? Book a free 30-minute strategy call at https://www.conwaygroup.com.au/appointments

Understanding the Real Cost Behind Each Model

Many businesses assume that contractors are more affordable, but that’s not always the case. I break this down in more detail in my related blog: Why Don’t I Get Paid More? Understanding Pay, Profit, and Margin in Allied Health.

Employees cost more than their hourly wage. You also need to factor in:

  • Superannuation (11.5% and increasing to 12% in July)

  • Leave entitlements (annual, sick, public holidays)

  • Payroll tax (if applicable)

  • Training and onboarding time

  • Admin and supervision overheads

  • Employee insurance and workers compensation

A good rule of thumb is to apply a 1.5x multiplier to the base salary to estimate total cost. For example, a clinician on a $100,000 salary may actually cost the business ~$150,000 annually.

Contractors, while more expensive per hour, don’t carry entitlement liabilities. But over time, their higher rates and less predictable availability can impact profitability, especially when scaling. Many providers also underestimate the time needed to manage contractors, onboard them to systems, and coordinate client handovers.

Key takeaway: Contractors may be cost-effective short term, but employees are often more efficient and sustainable long term if well supported.

Benefits of Contractors for Scaling and Startups

Contractors offer key advantages when:

  • Launching a new service line (e.g. new disciplines or new funding streams)

  • Expanding into a new region or community

  • Covering short-term demand or waitlist spikes

  • Starting a new business without locking in fixed costs

Because contractors can be onboarded quickly and don’t create leave liabilities, they’re often ideal during periods of experimentation or high uncertainty.

Startups often begin with contractors to minimise financial risk while testing the market. Contractors can be engaged on flexible terms and quickly scaled up or down based on client demand, which is invaluable in the first 6-12 months of operation.

Should You Pay Super to Contractors?

Yes — in some cases. Even if a clinician is invoicing you as a contractor with their own ABN, you may still be legally required to pay superannuation.

According to the ATO, if a contractor is:

  • Paid mainly for their personal labour or skills (i.e. not for supplying equipment or a broader business service), and

  • Cannot delegate the work to someone else (i.e. you’ve hired them specifically, not their business)

— then they are considered an “employee for superannuation purposes.”

This rule applies even if:

  • The contractor works under an ABN

  • You have a signed contractor agreement

  • They invoice you rather than being on payroll

The ATO’s view is that the substance of the relationship is what matters — not just the labels used in contracts.

Example:

If you engage a sole trader Speech Pathologist to deliver sessions directly to your clients, and they can’t send someone else in their place, you are likely required to pay super — even if they’re a contractor in every other sense.

What You Need to Do:

  • Refer to the ATO website: Employee or independent contractor to assess each arrangement

  • Seek HR or legal advice if you’re unsure

  • If super should be paid, you must pay it to their nominated fund quarterly — just like you would for an employee

Failing to meet this obligation can result in:

  • Backdated super payments (plus interest)

  • Superannuation Guarantee Charge (SGC)

  • Administrative penalties

This is one of the most common compliance traps for Allied Health businesses using contractors — especially when you scale.

TL;DR: If they’re doing the work personally and can’t subcontract it, you may owe them super — regardless of what your agreement says.

Refer to the ATO website: Super for independent contractors

Sole Traders vs Pty Ltd Contractors

In Allied Health, most contractors operate as sole traders (ABN only). Others may establish a Pty Ltd company.

Sole traders:

  • Easier and cheaper to set up

  • Still carry sham contracting risk if work structure mirrors employment

Pty Ltd companies:

  • Offer a layer of separation and lower risk of misclassification

  • May have their own insurance, compliance, and subcontracting

  • Seen as more independent in the eyes of regulators

However, even Pty Ltd contractors can be classified as employees if the working relationship isn’t structured correctly. It’s about behaviour, not the business name on the invoice. If you’re providing fixed rosters, mandatory supervision, and team integration, the risk of reclassification remains.

Sham Contracting: A Major Risk

Engaging someone as a contractor but treating them like an employee can breach the Fair Work Act.

Red flags include:

  • Fixed hours and rosters

  • Mandatory team meetings or supervision

  • Tools, uniforms, or systems provided by the business

  • Contractor cannot subcontract or work elsewhere

Penalties include:

  • Back pay for leave, super, and overtime

  • Fines of up to $93,900 per breach

  • Eligibility for unfair dismissal claims and protected entitlements

To avoid sham contracting, businesses must align contracts, behaviour, and expectations with the nature of the engagement. This includes documenting flexibility, independence, and non-exclusive relationships in writing and in practice.

Important: Always seek professional HR or employment law advice before engaging or reclassifying staff. Misclassification can lead to serious penalties.

Impact on Client Experience

The workforce model you choose doesn’t just affect staff — it impacts clients too.

Employees tend to offer more stability, support, and consistency. With structured supervision and more alignment to team values, client outcomes often benefit. Employees are also more likely to stay with a provider long-term, supporting stronger therapeutic relationships.

Contractors may be less available for long-term engagement or less involved in service development. Some clients value continuity and culture, especially in complex or trauma-informed care. If a contractor leaves suddenly, it can lead to service disruption, loss of rapport, and additional admin burden.

Client experience should be a key consideration in your workforce strategy. It’s not just about cost and compliance—it’s also about outcomes.

Transitioning Between Models

If you’re shifting from a contractor-heavy workforce to an employed team (or vice versa), plan carefully.

  • Communicate clearly and early with your team

  • Review contracts, entitlements, and transition plans

  • Expect some cultural shifts or pushback

Some businesses transition contractors into employee roles by offering attractive packages, flexible terms, and a clear explanation of the long-term benefits. Others retain a hybrid model, using contractors for overflow and employees for core services.

Transparency is key. Abrupt changes without consultation can damage trust and retention.

A Simple Framework: Contractor vs Employee

Ask yourself:

  • Am I prioritising short-term delivery or long-term growth?

  • Do I need full integration or flexible coverage?

  • Do I have the systems to manage compliance and supervision?

  • Can I offer team culture, supervision, and retention strategies?

Use this as a regular check-in as your business evolves. The right workforce mix may change as you grow.

Final Thoughts: No One-Size-Fits-All

The right model depends on your goals, your systems, your clients, and your stage of growth. For clinicians, it also depends on lifestyle, risk appetite, and support needs.

There are excellent clinicians and businesses using both models successfully. The key is to choose with intention — and know your risks.

Workforce planning is never set-and-forget. It requires continuous reflection, realignment, and responsiveness to your environment.

🚀 Need help evaluating your workforce model or planning your next hire? Book a free 30-minute strategy call at https://www.conwaygroup.com.au/appointments

Trystan Conway

Trystan is an Allied Health business consultant and experienced physiotherapist who helps NDIS, Aged Care, and Allied Health providers optimise operations, improve profit margins, and achieve sustainable growth. With a proven track record scaling an Allied Health startup to 300+ staff and over $15 million in annual revenue, Trystan specialises in business strategy, financial performance, and system optimisation. He provides practical, hands-on consulting to help healthcare organisations streamline their services, reduce overheads, and build long-term success.

https://www.conwaygroup.com.au
Previous
Previous

How to Support Leadership Growth in Allied Health Teams

Next
Next

Why Don’t I Get Paid More? Understanding Pay, Profit, and Margin in Allied Health